#
# Makefile for Generic UNIX
#
# CAUTION:  Make changes to Makefile (not makefile), then run
# "make -f Makefile depend" before running "make all".
#
RANLIB=../gish/bin/ranlib
#OPTIONS = -DREFINED_STATS
DEFINES = ${OPTIONS}
INCLUDES = -I.. -I../../gish/include -I../../ncbi/include
CC = cc
CCOPT = -O
CFLAGS = $(CCOPT) ${INCLUDES} ${DEFINES}
MKDEPFLAG = -M
# Unbundled Sun Compiler is different
#MKDEPFLAG = -xM

SRC = blast.c alphabet.c str.c rescomp.c resfreq.c score.c karlin.c wordfind.c \
	neighbor.c encoded.c search.c degen.c hsp.c span.c \
	hitlist.c consistn.c evals.c pcnt.c consists.c sort.c filter.c \
	util.c error.c vscore.c config.c consistp.c tools.c


OBJ = blast.o alphabet.o str.o rescomp.o resfreq.o score.o karlin.o wordfind.o \
	neighbor.o encoded.o search.o degen.o hsp.o span.o \
	hitlist.o consistn.o evals.o pcnt.o consists.o sort.o filter.o \
	util.o error.o vscore.o config.o consistp.o searchs.o tools.o

all:	${OBJ} ../libblast.a

clean:
	rm -f ${OBJ} ../libblast.a makefile makefile.old

../libblast.a: ${OBJ}
	ar cru $@ ${OBJ}
	$(RANLIB) $@

searchs.o: search.c
	$(CC) $(CFLAGS) -c -o searchs.o -DBLAST_STATS search.c

depend: Makefile ${SRC}
	- mv -f  makefile makefile.old
	@ sed -n -e '1,/[D]O NOT MAKE ANY CHANGES/p' Makefile > makefile
	@ echo "" >> makefile
	@ ${CC} ${CFLAGS} ${MKDEPFLAG} ${SRC} >> makefile

#DO NOT MAKE ANY CHANGES ON OR BELOW THIS LINE