TBLASTX 1.4.6MP [16-Oct-94] [Build 06:35:34 Oct 18 1994] Reference: Gish, W. (1994). unpublished. Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame of the query sequence and one entire reading frame of the database code for protein and that significant alignments will only involve coding reading frames. Query= gnl|dbest|62578 cDNA Human epidermal keratinocyte (406 letters) Translating both strands of query sequence in all 6 reading frames Database: Database of Expressed Sequence Tags, Release, 2.34 51,809 sequences; 16,467,861 total letters. Searching..................................................done Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gnl|dbest|62578 cDNA Human epidermal keratinocyte H.sa... -2 487 1.3e-62 1 gnl|dbest|51029 cDNA Human promyelocyte H.sapiens Hom... +3 63 0.12 1 gnl|dbest|26957 cDNA Fetal brain, Stratagene (cat#9362... -2 63 0.58 1 gnl|dbest|51188 cDNA Human promyelocyte H.sapiens Hom... +3 55 0.58 1 gnl|dbest|24743 cDNA Fetal brain, Stratagene (cat#9362... -2 63 0.59 1 gnl|dbest|285 cDNA Fetal brain, Stratagene (cat#9362... -2 63 0.62 1 gnl|dbest|1428 cDNA Fetal brain, Stratagene (cat#9362... -3 63 0.62 1 gnl|dbest|22802 cDNA Infant brain, Bento Soares H.sapi... -3 63 0.63 1 gnl|dbest|17272 cDNA Liver HepG2 cell line. H.sapiens ... +3 55 0.64 1 gnl|dbest|47855 cDNA Human colon mucosa H.sapiens Hom... +3 56 0.72 1 gnl|dbest|349 cDNA Fetal Brain, Bento Soares H.sapie... +3 62 0.78 1 gnl|dbest|51156 cDNA Human promyelocyte H.sapiens Hom... +3 53 0.79 1 gnl|dbest|40712 cDNA Atrium cDNA library Human heart H... +1 60 0.88 1 gnl|dbest|1618 cDNA Subtracted Hippocampus, Stratagen... +1 60 0.93 1 gnl|dbest|41213 cDNA Infant brain, Bento Soares H.sapi... -2 59 0.94 1 gnl|dbest|46603 cDNA Atrium cDNA library Human heart H... -3 60 0.95 1 gnl|dbest|26067 cDNA Fetal brain, Stratagene (cat#9362... +2 61 0.96 1 gnl|dbest|2260 cDNA Fetal brain, Stratagene (cat#9362... +1 59 0.96 1 gnl|dbest|2262 cDNA Fetal brain, Stratagene (cat#9362... +3 59 0.96 1 gnl|dbest|23901 cDNA Fetal brain, Stratagene (cat#9362... +3 59 0.97 1 gnl|dbest|53272 cDNA b4HB3MA H.sapiens Homology: gi|2... +1 61 0.97 1 gnl|dbest|30689 cDNA Human pancreatic islet H.sapiens ... -2 59 0.98 1 gnl|dbest|1780 cDNA Fetal brain, Stratagene (cat#9362... +3 59 0.98 1 gnl|dbest|24901 cDNA Fetal brain, Stratagene (cat#9362... -1 59 0.98 1 gnl|dbest|42855 cDNA Normalized infant brain, Bento So... -3 59 0.98 1 gnl|dbest|22103 cDNA Fetal brain, Stratagene H.sapiens... +2 50 0.98 1 gnl|dbest|53558 cDNA 3HFLSK20 H.sapiens Homology: sp|... -2 59 0.98 1 gnl|dbest|20732 cDNA 3HFLSK20 H.sapiens Homology: sp|... -2 59 0.98 1 gnl|dbest|26288 cDNA Fetal brain, Stratagene (cat#9362... +3 58 0.99 1 gnl|dbest|1504 cDNA Fetal brain, Stratagene (cat#9362... -3 59 0.99 1 gnl|dbest|1521 cDNA Fetal brain, Stratagene (cat#9362... -3 58 0.99 1 gnl|dbest|27008 cDNA Hippocampus, prescreened, Stratag... -1 58 0.990 1 gnl|dbest|26393 cDNA Fetal brain, Stratagene (cat#9362... +2 55 0.991 1 gnl|dbest|1792 cDNA Fetal brain, Stratagene (cat#9362... -2 58 0.995 1 gnl|dbest|24197 cDNA Fetal brain, Stratagene (cat#9362... +3 58 0.996 1 gnl|dbest|17234 cDNA Liver HepG2 cell line. H.sapiens ... +1 50 0.996 1 gnl|dbest|25494 cDNA Fetal brain, Stratagene (cat#9362... +1 55 0.998 1 gnl|dbest|25591 cDNA Fetal brain, Stratagene (cat#9362... -1 58 0.998 1 gnl|dbest|25652 cDNA Fetal brain, Stratagene (cat#9362... -3 58 0.998 1 gnl|dbest|1552 cDNA Hippocampus, Stratagene (cat. #93... -1 58 0.998 1 gnl|dbest|22494 cDNA Infant brain, Bento Soares H.sapi... -2 56 0.998 1 gnl|dbest|1465 cDNA Fetal brain, Stratagene (cat#9362... -3 58 0.998 1 gnl|dbest|1421 cDNA Fetal brain, Stratagene (cat#9362... -1 57 0.999 1 gnl|dbest|41429 cDNA Infant brain, Bento Soares H.sapi... -3 58 0.999 1 gnl|dbest|41487 cDNA Infant brain, Bento Soares H.sapi... -2 58 0.9992 1 gnl|dbest|17226 cDNA Liver HepG2 cell line. H.sapiens ... +1 49 0.9997 1 gnl|dbest|22604 cDNA Infant brain, Bento Soares H.sapi... -2 57 0.9998 1 gnl|dbest|24200 cDNA Fetal brain, Stratagene (cat#9362... -3 57 0.9999 1 gnl|dbest|26305 cDNA Fetal brain, Stratagene (cat#9362... +3 55 0.9999 1 gnl|dbest|1939 cDNA Fetal brain, Stratagene (cat#9362... -2 57 0.99993 1 gnl|dbest|40670 cDNA Atrium cDNA library Human heart H... +1 57 0.99993 1 gnl|dbest|25808 cDNA Fetal brain, Stratagene (cat#9362... +2 56 0.99994 1 >gnl|dbest|62578 cDNA Human epidermal keratinocyte H.sapiens Homology: dbj|D29023|HUMNK010 Human keratinocyte cDNA, clone 010. Score: 2023 pVal: 2.5e-163 Length = 406 Plus Strand HSPs: Score = 362 (166.5 bits), Expect = 2.7e-55, Sum P(2) = 2.7e-55 Identities = 68/97 (70%), Positives = 68/97 (70%), Frame = +2 / +2 Query: 2 STHPPLSNLAQVLVRHGTRTGHGDLG*XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQCL 181 STHPPLSNLAQVLVRHGTRTGHGDLG* LQCL Sbjct: 2 STHPPLSNLAQVLVRHGTRTGHGDLG*FFSLPSSLFFFFSHSSFSFPAVSCSPVSVLQCL 181 Query: 182 ELQRGWPWGGVHMDMGVSRFDGHGHRQVRWPEFFQLT 292 ELQRGWPWGGVHMDMGVSRFDGHGHRQVRWPEFFQLT Sbjct: 182 ELQRGWPWGGVHMDMGVSRFDGHGHRQVRWPEFFQLT 292 Score = 320 (147.2 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60 Identities = 63/78 (80%), Positives = 63/78 (80%), Frame = +1 / +1 Query: 172 AVSGAPERLALGWGPHGHGRKQV*WSWA*AGSMARVLSAHSKXXXXXXXXXXXXXXXRWS 351 AVSGAPERLALGWGPHGHGRKQV*WSWA*AGSMARVLSAHSK RWS Sbjct: 172 AVSGAPERLALGWGPHGHGRKQV*WSWA*AGSMARVLSAHSKFCFVLFCFVLFXFCFRWS 351 Query: 352 LALSPIALQPGRQEWKLC 405 LALSPIALQPGRQEWKLC Sbjct: 352 LALSPIALQPGRQEWKLC 405 Score = 158 (72.7 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60 Identities = 28/28 (100%), Positives = 28/28 (100%), Frame = +1 / +1 Query: 1 QHTPSTLQPCPSAGPSRHQDRAWRLGLI 84 QHTPSTLQPCPSAGPSRHQDRAWRLGLI Sbjct: 1 QHTPSTLQPCPSAGPSRHQDRAWRLGLI 84 Score = 77 (35.4 bits), Expect = 2.7e-55, Sum P(2) = 2.7e-55 Identities = 15/15 (100%), Positives = 15/15 (100%), Frame = +2 / +2 Query: 362 RPLHSSLGDKSGNSV 406 RPLHSSLGDKSGNSV Sbjct: 362 RPLHSSLGDKSGNSV 406 Minus Strand HSPs: Score = 487 (224.0 bits), Expect = 1.3e-62, P = 1.3e-62 Identities = 96/135 (71%), Positives = 96/135 (71%), Frame = -2 / -2 Query: 405 TEFPLLSPRLECNGRQXXXXXXXXXXXXXXXXXXXXLTVS*KNSGHRTCLCP*PSNLLTP 226 TEFPLLSPRLECNGRQ LTVS*KNSGHRTCLCP*PSNLLTP Sbjct: 405 TEFPLLSPRLECNGRQSKTPSKTKXKQNKTKQNKTKLTVS*KNSGHRTCLCP*PSNLLTP 226 Query: 225 MSMWTPPQGQPLWSSRHCRTETGEQETAXXXXXXXXXXXXXXXXXXXNQPKSPCPVLVP* 46 MSMWTPPQGQPLWSSRHCRTETGEQETA NQPKSPCPVLVP* Sbjct: 225 MSMWTPPQGQPLWSSRHCRTETGEQETAGKEKEE*EKKKKREEGREKNQPKSPCPVLVP* 46 Query: 45 RTSTWARLESGGCVL 1 RTSTWARLESGGCVL Sbjct: 45 RTSTWARLESGGCVL 1 Score = 156 (71.8 bits), Expect = 8.0e-16, P = 8.0e-16 Identities = 32/48 (66%), Positives = 32/48 (66%), Frame = -1 / -1 Query: 406 DRVSTLVAQAGVQWATKQDSIXXXXXXXXXXXXXXXXYCELKELWPSN 263 DRVSTLVAQAGVQWATKQDSI YCELKELWPSN Sbjct: 406 DRVSTLVAQAGVQWATKQDSI*NKTXTKQNKTKQNKTYCELKELWPSN 263 >gnl|dbest|51029 cDNA Human promyelocyte H.sapiens Homology: gb|D12407|HUM00TW130 Human HepG2 3'-directed MboI cDNA, clone tw1-30 Score: 671 pVal: 9.1e-51 Length = 168 Plus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.13, P = 0.12 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / +3 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 9 HCTPAWATRVK 41 Minus Strand HSPs: Score = 61 (28.1 bits), Expect = 0.65, P = 0.48 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / -2 Query: 398 FHSCRPGWSAM 366 FHSC PGWSAM Sbjct: 41 FHSCCPGWSAM 9 >gnl|dbest|26957 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L20321|HUMSTK2A_1 protein serine/threonine kinase [Homo sapiens] Score: 153 pVal: 8.5e-16 Length = 314 Minus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.86, P = 0.58 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 43 HCTPAWATRVK 11 >gnl|dbest|51188 cDNA Human promyelocyte H.sapiens Homology: gb|L04193|HUMLIMGP Human lens membrane protein (mp19) gene, exon 11. Score: 313 pVal: 1.6e-18 Length = 103 Plus Strand HSPs: Score = 55 (25.3 bits), Expect = 0.87, P = 0.58 Identities = 8/13 (61%), Positives = 10/13 (76%), Frame = +3 / +3 Query: 366 HCTPAWATRVETL 404 HCTPAW T +T+ Sbjct: 9 HCTPAWVTEQDTV 47 >gnl|dbest|24743 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23963|ALUE_HUMAN !!!! ALU CLASS E WARNING ENTRY !!!! >pir|E40201|E40201 artifact-warning sequence (translated ALU class E) - human Score: 204 pVal: 3.8e-24 Length = 333 Minus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.90, P = 0.59 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 59 HCTPAWATRVK 27 Plus Strand HSPs: Score = 61 (28.1 bits), Expect = 3.4, P = 0.97 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / +3 Query: 398 FHSCRPGWSAM 366 FHSC PGWSAM Sbjct: 27 FHSCCPGWSAM 59 >gnl|dbest|285 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23963|ALUE_HUMAN !!!! ALU CLASS E WARNING ENTRY !!!! >pir|E40201|E40201 artifact-warning sequence (translated ALU class E) - human Score: 201 pVal: 8.6e-24 Length = 363 Minus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.97, P = 0.62 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 35 HCTPAWATRVK 3 Plus Strand HSPs: Score = 61 (28.1 bits), Expect = 3.6, P = 0.97 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / +3 Query: 398 FHSCRPGWSAM 366 FHSC PGWSAM Sbjct: 3 FHSCCPGWSAM 35 >gnl|dbest|1428 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L24521|HUMTRRP_1 transformation-related protein [Homo sapiens] Score: 194 pVal: 2.3e-22 Length = 370 Minus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.98, P = 0.62 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / -3 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 47 HCTPAWATRVK 15 Plus Strand HSPs: Score = 61 (28.1 bits), Expect = 3.6, P = 0.97 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / +3 Query: 398 FHSCRPGWSAM 366 FHSC PGWSAM Sbjct: 15 FHSCCPGWSAM 47 >gnl|dbest|22802 cDNA Infant brain, Bento Soares H.sapiens Homology: sp|P23963|ALUE_HUMAN !!!! ALU CLASS E WARNING ENTRY !!!! >pir|E40201|E40201 artifact-warning sequence (translated ALU class E) - human Score: 210 pVal: 7.5e-24 Length = 371 Minus Strand HSPs: Score = 63 (29.0 bits), Expect = 0.99, P = 0.63 Identities = 10/11 (90%), Positives = 11/11 (100%), Frame = +3 / -3 Query: 366 HCTPAWATRVE 398 HCTPAWATRV+ Sbjct: 42 HCTPAWATRVK 10 >gnl|dbest|17272 cDNA Liver HepG2 cell line. H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 75 pVal: 0.00018 Length = 87 Plus Strand HSPs: Score = 55 (25.3 bits), Expect = 1.0, P = 0.64 Identities = 8/13 (61%), Positives = 11/13 (84%), Frame = +3 / +3 Query: 366 HCTPAWATRVETL 404 HCTPAWAT +++ Sbjct: 9 HCTPAWATERDSI 47 >gnl|dbest|47855 cDNA Human colon mucosa H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 82 pVal: 4.6e-05 Length = 52 Plus Strand HSPs: Score = 56 (25.8 bits), Expect = 1.3, P = 0.72 Identities = 8/13 (61%), Positives = 11/13 (84%), Frame = +3 / +3 Query: 366 HCTPAWATRVETL 404 HCTPAWAT +++ Sbjct: 9 HCTPAWATEXDSV 47 >gnl|dbest|349 cDNA Fetal Brain, Bento Soares H.sapiens Homology: gp|L06662|CHKTENSN_1 tensin [Gallus gallus] >gp|Z18529|GGTENSINA_1 tensin [Gallus gallus] Score: 78 pVal: 0.0067 Length = 407 Plus Strand HSPs: Score = 62 (28.5 bits), Expect = 1.5, P = 0.78 Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +3 / +3 Query: 6 HTLHSPTLPKCWSVTAPGQGME 71 H +H P L KCW P QG + Sbjct: 228 HRVHVPVLIKCWPQALPSQGSQ 293 >gnl|dbest|51156 cDNA Human promyelocyte H.sapiens Homology: gb|X70287|HSTHDB H.sapiens gene for thioredoxin, exons 2 and 3 Score: 247 pVal: 4.8e-13 Length = 113 Plus Strand HSPs: Score = 53 (24.4 bits), Expect = 1.6, P = 0.79 Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +3 / +3 Query: 366 HCTPAWAT 389 HCTPAWAT Sbjct: 9 HCTPAWAT 32 >gnl|dbest|40712 cDNA Atrium cDNA library Human heart H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 76 pVal: 3.1e-09 Length = 253 Plus Strand HSPs: Score = 60 (27.6 bits), Expect = 2.1, P = 0.88 Identities = 10/15 (66%), Positives = 11/15 (73%), Frame = +3 / +1 Query: 360 VAHCTPAWATRVETL 404 + HCTPAW T ETL Sbjct: 202 LCHCTPAWVTGKETL 246 >gnl|dbest|1618 cDNA Subtracted Hippocampus, Stratagene (cat. #936205) H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 142 pVal: 1.1e-13 Length = 317 Plus Strand HSPs: Score = 60 (27.6 bits), Expect = 2.7, P = 0.93 Identities = 9/11 (81%), Positives = 11/11 (100%), Frame = +3 / +1 Query: 366 HCTPAWATRVE 398 HCTPAWATR++ Sbjct: 70 HCTPAWATRLK 102 >gnl|dbest|41213 cDNA Infant brain, Bento Soares H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 153 pVal: 7.9e-17 Length = 238 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 2.8, P = 0.94 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 42 HCTPAWATRAK 10 >gnl|dbest|46603 cDNA Atrium cDNA library Human heart H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 243 pVal: 5.3e-31 Length = 397 Minus Strand HSPs: Score = 60 (27.6 bits), Expect = 3.1, P = 0.95 Identities = 9/15 (60%), Positives = 12/15 (80%), Frame = +3 / -3 Query: 360 VAHCTPAWATRVETL 404 + HCTPAWAT+ T+ Sbjct: 176 LCHCTPAWATKRSTI 132 >gnl|dbest|26067 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 148 pVal: 1.1e-15 Length = 305 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.7, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAW TRV+ Sbjct: 37 HCTPAWTTRVK 5 Plus Strand HSPs: Score = 61 (28.1 bits), Expect = 3.1, P = 0.96 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / +2 Query: 398 FHSCRPGWSAM 366 FHSC PGWSAM Sbjct: 5 FHSCCPGWSAM 37 >gnl|dbest|2260 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gb|M85807|M85807 EST02328 Homo sapiens cDNA clone HFBCN96 similar to Alu repetitive element. Score: 1297 pVal: 7.9e-103 Length = 263 Plus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.2, P = 0.96 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +1 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 1 HCTPAWATRAK 33 >gnl|dbest|2262 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gb|M85809|M85809 EST02330 Homo sapiens cDNA clone HFBCO24 similar to Alu repetitive element. Score: 1373 pVal: 3.5e-109 Length = 277 Plus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.3, P = 0.96 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +3 Query: 366 HCTPAWATRVE 398 HCTPAW TRV+ Sbjct: 3 HCTPAWVTRVK 35 Minus Strand HSPs: Score = 60 (27.6 bits), Expect = 4.0, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = -3 / -3 Query: 398 FHSCRPGWSAM 366 FHSC PGWSA+ Sbjct: 35 FHSCHPGWSAV 3 >gnl|dbest|23901 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23964|ALUF_HUMAN !!!! ALU CLASS F WARNING ENTRY !!!! >pir|F40201|F40201 artifact-warning sequence (translated ALU class F) - human Score: 103 pVal: 1.3e-08 Length = 281 Plus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.4, P = 0.97 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +3 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 51 HCTPAWATRAK 83 >gnl|dbest|53272 cDNA b4HB3MA H.sapiens Homology: gi|288145|gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 200 pVal: 8.4e-23 Length = 349 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 4.1, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 198 HCTPAWATRAK 166 Plus Strand HSPs: Score = 61 (28.1 bits), Expect = 3.5, P = 0.97 Identities = 10/11 (90%), Positives = 10/11 (90%), Frame = -3 / +1 Query: 398 FHSCRPGWSAM 366 F SCRPGWSAM Sbjct: 166 FRSCRPGWSAM 198 >gnl|dbest|30689 cDNA Human pancreatic islet H.sapiens Homology: gb|T10779|T10779 hbc1256 Homo sapiens cDNA clone hbc1256 5'end. Score: 1044 pVal: 1.1e-81 Length = 210 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.7, P = 0.98 Identities = 9/11 (81%), Positives = 9/11 (81%), Frame = -3 / -2 Query: 224 CPCGPHPRASL 192 CPCGPHPR L Sbjct: 50 CPCGPHPRPLL 18 >gnl|dbest|1780 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 174 pVal: 2.4e-19 Length = 318 Plus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.8, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +3 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 135 HCTPAWATRAK 167 >gnl|dbest|24901 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L26953|HUMPROTXA_1 Homo sapiens chromosomal protein mRNA, complete cds. [Homo sapiens] Score: 83 pVal: 0.00022 Length = 322 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 3.9, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -1 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 298 HCTPAWATRAK 266 >gnl|dbest|42855 cDNA Normalized infant brain, Bento Soares H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 120 pVal: 1.1e-17 Length = 337 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 4.0, P = 0.98 Identities = 9/13 (69%), Positives = 11/13 (84%), Frame = +3 / -3 Query: 360 VAHCTPAWATRVE 398 + HCTPAWA RV+ Sbjct: 50 LCHCTPAWAXRVK 12 >gnl|dbest|22103 cDNA Fetal brain, Stratagene H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 80 pVal: 1.5e-05 Length = 121 Plus Strand HSPs: Score = 50 (23.0 bits), Expect = 4.1, P = 0.98 Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +3 / +2 Query: 348 ESCFVAHCTPAWATRVETL 404 E C HCT AWAT +++ Sbjct: 47 ELCCSHHCTLAWATE*DSI 103 >gnl|dbest|53558 cDNA 3HFLSK20 H.sapiens Homology: sp|P20931|BCGF_HUMAN B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD). >sp|P20931|BCGF_HUMAN B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD). >pir|A47582|A47582 B-cell growth factor precursor - human >gp|M15530|HUMBCGF_1 BCGF1 gene product [Homo Score: 162 pVal: 6e-18 Length = 349 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 4.1, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 45 HCTPAWATRAK 13 >gnl|dbest|20732 cDNA 3HFLSK20 H.sapiens Homology: sp|P20931|BCGF_HUMAN B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD). >gp|M15530|HUMBCGF_1 BCGF1 gene product [Homo sapiens] Score: 162 pVal: 5.3e-18 Length = 349 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 4.1, P = 0.98 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 45 HCTPAWATRAK 13 >gnl|dbest|26288 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 151 pVal: 1.5e-16 Length = 245 Plus Strand HSPs: Score = 58 (26.7 bits), Expect = 4.2, P = 0.99 Identities = 8/15 (53%), Positives = 12/15 (80%), Frame = +3 / +3 Query: 360 VAHCTPAWATRVETL 404 V HCTPAW T ++++ Sbjct: 123 VCHCTPAWVTELDSV 167 >gnl|dbest|1504 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 199 pVal: 2e-23 Length = 387 Minus Strand HSPs: Score = 59 (27.1 bits), Expect = 4.4, P = 0.99 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -3 Query: 366 HCTPAWATRVE 398 HCTPAWATR + Sbjct: 34 HCTPAWATRAK 2 >gnl|dbest|1521 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L20321|HUMSTK2A_1 protein serine/threonine kinase [Homo sapiens] Score: 152 pVal: 1.1e-15 Length = 257 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 4.5, P = 0.99 Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +3 / -3 Query: 366 HCTPAWATR 392 HCTPAWATR Sbjct: 33 HCTPAWATR 7 >gnl|dbest|27008 cDNA Hippocampus, prescreened, Stratagene (cat#936205) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 134 pVal: 1.7e-13 Length = 261 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 4.6, P = 0.99 Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +3 / -1 Query: 366 HCTPAWATR 392 HCTPAWATR Sbjct: 60 HCTPAWATR 34 >gnl|dbest|26393 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 125 pVal: 1.1e-11 Length = 161 Plus Strand HSPs: Score = 55 (25.3 bits), Expect = 4.7, P = 0.99 Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +3 / +2 Query: 366 HCTPAWATRVE 398 HCTPAW TR + Sbjct: 59 HCTPAWVTRAK 91 Minus Strand HSPs: Score = 56 (25.8 bits), Expect = 4.9, P = 0.99 Identities = 9/11 (81%), Positives = 9/11 (81%), Frame = -3 / -2 Query: 398 FHSCRPGWSAM 366 F SC PGWSAM Sbjct: 91 FRSCHPGWSAM 59 >gnl|dbest|1792 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 217 pVal: 9.7e-27 Length = 301 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 5.3, P = 1.0 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRVE 398 HCTPAW TRV+ Sbjct: 36 HCTPAWETRVK 4 >gnl|dbest|24197 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 187 pVal: 2e-22 Length = 325 Plus Strand HSPs: Score = 58 (26.7 bits), Expect = 5.6, P = 1.0 Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +3 / +3 Query: 366 HCTPAWATR 392 HCTPAWATR Sbjct: 108 HCTPAWATR 134 >gnl|dbest|17234 cDNA Liver HepG2 cell line. H.sapiens Homology: gp|L20321|HUMSTK2A_1 protein serine/threonine kinase [Homo sapiens] Score: 91 pVal: 2.8e-07 Length = 89 Plus Strand HSPs: Score = 50 (23.0 bits), Expect = 5.6, P = 1.0 Identities = 7/9 (77%), Positives = 8/9 (88%), Frame = +3 / +1 Query: 363 AHCTPAWAT 389 +HCTPAW T Sbjct: 46 SHCTPAWVT 72 >gnl|dbest|25494 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 152 pVal: 8.4e-17 Length = 168 Plus Strand HSPs: Score = 55 (25.3 bits), Expect = 6.0, P = 1.0 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +1 Query: 366 HCTPAWATRVE 398 HCT AWATRV+ Sbjct: 115 HCTAAWATRVK 147 >gnl|dbest|25591 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 184 pVal: 2.3e-26 Length = 352 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 6.0, P = 1.0 Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +3 / -1 Query: 366 HCTPAWATR 392 HCTPAWATR Sbjct: 49 HCTPAWATR 23 >gnl|dbest|25652 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 235 pVal: 2.2e-28 Length = 365 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 6.1, P = 1.0 Identities = 9/13 (69%), Positives = 11/13 (84%), Frame = +3 / -3 Query: 366 HCTPAWATRVETL 404 HCTPAWAT ++L Sbjct: 54 HCTPAWATEQDSL 16 >gnl|dbest|1552 cDNA Hippocampus, Stratagene (cat. #936205) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 115 pVal: 2.5e-09 Length = 378 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 6.3, P = 1.0 Identities = 9/10 (90%), Positives = 9/10 (90%), Frame = +3 / -1 Query: 366 HCTPAWATRV 395 HCTPAW TRV Sbjct: 267 HCTPAWGTRV 238 >gnl|dbest|22494 cDNA Infant brain, Bento Soares H.sapiens Homology: gp|L20321|HUMSTK2A_1 protein serine/threonine kinase [Homo sapiens] Score: 166 pVal: 7.7e-17 Length = 201 Minus Strand HSPs: Score = 56 (25.8 bits), Expect = 6.4, P = 1.0 Identities = 8/13 (61%), Positives = 11/13 (84%), Frame = +3 / -2 Query: 366 HCTPAWATRVETL 404 HCTPAWAT +++ Sbjct: 41 HCTPAWATEQDSI 3 >gnl|dbest|1465 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L24521|HUMTRRP_1 transformation-related protein [Homo sapiens] Score: 156 pVal: 7.9e-16 Length = 398 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 6.5, P = 1.0 Identities = 9/13 (69%), Positives = 10/13 (76%), Frame = +3 / -3 Query: 366 HCTPAWATRVETL 404 HCTPAW TR + L Sbjct: 42 HCTPAWVTRAKLL 4 >gnl|dbest|1421 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 168 pVal: 6.9e-19 Length = 255 Minus Strand HSPs: Score = 57 (26.2 bits), Expect = 6.5, P = 1.0 Identities = 9/13 (69%), Positives = 11/13 (84%), Frame = +3 / -1 Query: 366 HCTPAWATRVETL 404 HCTPAWAT ++L Sbjct: 39 HCTPAWATERDSL 1 >gnl|dbest|41429 cDNA Infant brain, Bento Soares H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 113 pVal: 1.1e-18 Length = 431 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 6.7, P = 1.0 Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +3 / -3 Query: 366 HCTPAWATR 392 HCTPAWATR Sbjct: 39 HCTPAWATR 13 >gnl|dbest|41487 cDNA Infant brain, Bento Soares H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 265 pVal: 3.9e-34 Length = 484 Minus Strand HSPs: Score = 58 (26.7 bits), Expect = 7.1, P = 1.0 Identities = 9/10 (90%), Positives = 9/10 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRV 395 HCTPAW TRV Sbjct: 45 HCTPAWGTRV 16 >gnl|dbest|17226 cDNA Liver HepG2 cell line. H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 96 pVal: 1.8e-07 Length = 89 Plus Strand HSPs: Score = 49 (22.5 bits), Expect = 8.0, P = 1.0 Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +3 / +1 Query: 366 HCTPAWAT 389 HCTPAW T Sbjct: 49 HCTPAWVT 72 >gnl|dbest|22604 cDNA Infant brain, Bento Soares H.sapiens Homology: gp|L20321|HUMSTK2A_1 protein serine/threonine kinase [Homo sapiens] Score: 157 pVal: 1.6e-16 Length = 350 Minus Strand HSPs: Score = 57 (26.2 bits), Expect = 8.6, P = 1.0 Identities = 9/10 (90%), Positives = 9/10 (90%), Frame = +3 / -2 Query: 366 HCTPAWATRV 395 HCTPAWA RV Sbjct: 46 HCTPAWAXRV 17 >gnl|dbest|24200 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23959|ALUA_HUMAN !!!! ALU CLASS A WARNING ENTRY !!!! >pir|A40201|A40201 artifact-warning sequence (translated ALU class A) - human Score: 240 pVal: 4.8e-30 Length = 383 Minus Strand HSPs: Score = 57 (26.2 bits), Expect = 9.1, P = 1.0 Identities = 9/12 (75%), Positives = 10/12 (83%), Frame = +3 / -3 Query: 366 HCTPAWATRVET 401 HCTPAWAT +T Sbjct: 36 HCTPAWATERDT 1 >gnl|dbest|26305 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|X55777|HSMHCHHS_2 H.sapiens Mahlavu hepatocellular carcinoma hhc(M) DNA [Homo sapiens] Score: 193 pVal: 1.6e-22 Length = 197 Plus Strand HSPs: Score = 55 (25.3 bits), Expect = 9.1, P = 1.0 Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +3 / +3 Query: 366 HCTPAWATRVE 398 HCTPAW TR + Sbjct: 156 HCTPAWVTRAK 188 >gnl|dbest|1939 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: gp|L24521|HUMTRRP_1 transformation-related protein [Homo sapiens] Score: 134 pVal: 4.3e-13 Length = 421 Minus Strand HSPs: Score = 57 (26.2 bits), Expect = 9.6, P = 1.0 Identities = 8/13 (61%), Positives = 11/13 (84%), Frame = +3 / -2 Query: 366 HCTPAWATRVETL 404 HCTPAW T+V ++ Sbjct: 309 HCTPAWVTKVSSV 271 >gnl|dbest|40670 cDNA Atrium cDNA library Human heart H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 108 pVal: 1.4e-08 Length = 428 Plus Strand HSPs: Score = 57 (26.2 bits), Expect = 9.6, P = 1.0 Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3 / +1 Query: 366 HCTPAWATRVE 398 HCTPAWA RV+ Sbjct: 52 HCTPAWAIRVK 84 >gnl|dbest|25808 cDNA Fetal brain, Stratagene (cat#936206) H.sapiens Homology: sp|P23961|ALUC_HUMAN !!!! ALU CLASS C WARNING ENTRY !!!! >pir|C40201|C40201 artifact-warning sequence (translated ALU class C) - human Score: 244 pVal: 7.6e-29 Length = 263 Plus Strand HSPs: Score = 56 (25.8 bits), Expect = 9.7, P = 1.0 Identities = 8/13 (61%), Positives = 11/13 (84%), Frame = +3 / +2 Query: 366 HCTPAWATRVETL 404 HCTPAWAT +++ Sbjct: 80 HCTPAWATEQDSI 118 Parameters: -filter=seg+xnu V=500 B=250 -ctxfactor=31.1 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.319 0.135 0.396 +1 0 BLOSUM62 0.319 0.135 0.396 0.333 0.140 0.518 +2 0 BLOSUM62 0.319 0.135 0.396 0.330 0.145 0.505 +3 0 BLOSUM62 0.319 0.135 0.396 0.340 0.141 0.540 -1 0 BLOSUM62 0.319 0.135 0.396 0.319 0.129 0.412 -2 0 BLOSUM62 0.319 0.135 0.396 0.338 0.144 0.523 -3 0 BLOSUM62 0.319 0.135 0.396 0.327 0.138 0.497 Query Frame MatID Length Eff.Length E S W T X E2 S2 +1 0 135 91 10. 50 3 13 22 0.046 34 +2 0 135 83 10. 50 3 13 22 0.040 34 +3 0 134 70 10. 49 3 13 22 0.043 33 -1 0 135 71 10. 49 3 13 22 0.044 33 -2 0 135 96 10. 50 3 13 22 0.050 34 -3 0 134 86 10. 50 3 13 22 0.042 34 Statistics: Query Expected Observed HSPs HSPs Frame MatID High Score High Score Reportable Reported +1 0 54 (24.8 bits) 320 (147.2 bits) 2 2 +2 0 53 (24.4 bits) 362 (166.5 bits) 2 2 +3 0 52 (23.9 bits) 158 (72.7 bits) 50 50 -1 0 52 (23.9 bits) 191 (87.9 bits) 1 1 -2 0 54 (24.8 bits) 487 (224.0 bits) 1 1 -3 0 54 (24.8 bits) 317 (145.8 bits) 9 9 Query Neighborhd Word Excluded Failed Successful Overlaps Frame MatID Words Hits Hits Extensions Extensions Excluded +1 0 1348 2765310 578058 2187246 8 0 +2 0 1049 2206167 452338 1753811 20 0 +3 0 1062 1986007 421136 1564639 243 3 -1 0 965 1597082 351909 1245157 19 2 -2 0 1232 2982584 617545 2364990 54 2 -3 0 1342 2923590 625310 2298223 67 5 Database: Database of Expressed Sequence Tags, Release, 2.34 Release date: October 12, 1994 Posted date: 3:40 PM EDT Oct 12, 1994 # of letters in database: 16,467,861 # of sequences in database: 51,809 # of database sequences satisfying E: 52 No. of states in DFA: 562 (55 KB) Total size of DFA: 124 KB (128 KB) Time to generate neighborhood: 0.07u 0.00s 0.07t Real: 00:00:00 No. of processors used: 8 Time to search database: 84.36u 1.80s 86.16t Real: 00:00:12 Total cpu time: 84.59u 2.31s 86.90t Real: 00:00:12