BLASTN 1.4.7MP [16-Oct-94] [Build 06:27:54 Oct 18 1994] Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= SV4PG Simian Virus 40 genome, partial sequence (480 letters) Database: GenBank(R) Cumulative Daily (Oct 18) Updates 3109 sequences; 6,974,176 total letters. Searching..................................................done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|L36849|SYNSHBL Cloning vector pZEO (isolate SV1) phl... 1361 3.1e-107 1 gb|L36850|SYNLACZ Cloning vector pZEO (isolate SVLacZ) ... 1361 3.5e-107 1 emb|Z30317|CET16G12 Caenorhabditis elegans cosmid T16G12. 101 0.47 2 emb|Z35719|CEF17C8 Caenorhabditis elegans cosmid F17C8. 103 0.9992 1 >gb|L36849|SYNSHBL Cloning vector pZEO (isolate SV1) phleomycin/zeocin-binding protein gene, complete cds. Length = 3451 Minus Strand HSPs: Score = 1361 (376.1 bits), Expect = 3.1e-107, P = 3.1e-107 Identities = 275/279 (98%), Positives = 275/279 (98%), Strand = Minus / Plus Query: 279 GAACCAGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGG 220 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 GGATCCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGG 60 Query: 219 CAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGG 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGG 120 Query: 159 CTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCC 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCC 180 Query: 99 GCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCA 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 GCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCA 240 Query: 39 TGGCTGACTAATTTTTTTTATTTATGCAGAGGCCGNGGC 1 ||||||||||||||||||||||||||||||||||| ||| Sbjct: 241 TGGCTGACTAATTTTTTTTATTTATGCAGAGGCCGAGGC 279 >gb|L36850|SYNLACZ Cloning vector pZEO (isolate SVLacZ) beta-galactosidase (lacZ) gene, phleomycin/zeocin-binding protein (Sh Ble) gene, complete cds. Length = 6463 Minus Strand HSPs: Score = 1361 (376.1 bits), Expect = 3.5e-107, P = 3.5e-107 Identities = 275/279 (98%), Positives = 275/279 (98%), Strand = Minus / Plus Query: 279 GAACCAGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGG 220 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 GGATCCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGG 60 Query: 219 CAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGG 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGG 120 Query: 159 CTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCC 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCC 180 Query: 99 GCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCA 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 GCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCA 240 Query: 39 TGGCTGACTAATTTTTTTTATTTATGCAGAGGCCGNGGC 1 ||||||||||||||||||||||||||||||||||| ||| Sbjct: 241 TGGCTGACTAATTTTTTTTATTTATGCAGAGGCCGAGGC 279 >emb|Z30317|CET16G12 Caenorhabditis elegans cosmid T16G12. Length = 38,000 Minus Strand HSPs: Score = 101 (27.9 bits), Expect = 0.63, Sum P(2) = 0.47 Identities = 25/31 (80%), Positives = 25/31 (80%), Strand = Minus / Plus Query: 457 TTCACAAAATTGCAGCAAAAGCTCTAAAACA 427 || ||||||||||| |||| || || |||| Sbjct: 2278 TTTCCAAAATTGCAGTAAAATCTGTACAACA 2308 Score = 97 (26.8 bits), Expect = 0.63, Sum P(2) = 0.47 Identities = 21/23 (91%), Positives = 21/23 (91%), Strand = Minus / Plus Query: 282 AAAGAACCAGCTGTGGAATGTGT 260 ||| || |||||||||||||||| Sbjct: 32390 AAACAAGCAGCTGTGGAATGTGT 32412 >emb|Z35719|CEF17C8 Caenorhabditis elegans cosmid F17C8. Length = 32,445 Minus Strand HSPs: Score = 103 (28.5 bits), Expect = 7.2, P = 1.0 Identities = 35/53 (66%), Positives = 35/53 (66%), Strand = Minus / Plus Query: 435 TCTAAAACAAACACAAAAAGGCGTTGAGCTGTTTTTTTACTTTCAGTCCATGA 383 | ||| | ||| |||| | || || || |||||||||||| |||| Sbjct: 29528 TTTAATAAAAATTTCAAAACACTTTCTGCATATTAATTACTTTCAGTCAATGA 29580 Parameters: V=10 B=10 -ctxfactor=2.00 E=10 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.226 0.357 same same same -1 0 +5,-4 0.192 0.226 0.357 same same same Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 480 479 10. 98 11 N/A 73 0.021 80 -1 0 480 479 10. 98 11 N/A 73 0.021 80 Statistics: Query Expected Observed HSPs HSPs Strand MatID High Score High Score Reportable Reported +1 0 106 (29.3 bits) 99 (27.4 bits) 0 0 -1 0 106 (29.3 bits) 1361 (376.1 bits) 5 5 Query Neighborhd Word Excluded Failed Successful Overlaps Strand MatID Words Hits Hits Extensions Extensions Excluded +1 0 469 1410 145 1240 25 0 -1 0 469 1580 338 1188 54 8 Database: GenBank(R) Cumulative Daily (Oct 18) Updates Release date: 4:50 AM EDT Oct 18, 1994 Posted date: 4:50 AM EDT Oct 18, 1994 # of letters in database: 6,974,176 # of sequences in database: 3109 # of database sequences satisfying E: 4 No. of states in DFA: 224 (224 KB) Total size of DFA: 235 KB (256 KB) Time to generate neighborhood: 0.02u 0.01s 0.03t Real: 00:00:00 No. of processors used: 3 Time to search database: 0.90u 0.59s 1.49t Real: 00:00:02 Total cpu time: 0.95u 0.67s 1.62t Real: 00:00:02